During the packaging process, after selecting your file option, you have additional choices to optimize how Configuration Manager handles the installation process. Consider enabling these options based on your needs: Use Configuration Manager Standard Install.bat : When checked, Configuration Manager’s Install.bat adds a standard batch file to assist in the app installation process. The install file orchestrates the installation of any file named Setup.exe/msi or Setup-x64.exe/msi located in the same directory as the install.bat.